58 lines
1.6 KiB
Makefile
58 lines
1.6 KiB
Makefile
|
.PHONY: all clean clean_notebooks clean_report
|
||
|
|
|
||
|
|
all: output/manuscript.pdf
|
||
|
|
|
||
|
|
# List of plot image targets
|
||
|
|
PLOTS = output/plots/bell_violation.png\
|
||
|
|
output/plots/fidelity_dist.png\
|
||
|
|
output/plots/detector_comparison.png\
|
||
|
|
output/plots/visibility_distance.png\
|
||
|
|
output/plots/world_map.png\
|
||
|
|
output/plots/coincidence_rates.png\
|
||
|
|
output/plots/temperature_effects.png
|
||
|
|
|
||
|
|
# List of table targets
|
||
|
|
TABLES = output/tables/summary.tex\
|
||
|
|
output/tables/laboratories.tex
|
||
|
|
|
||
|
|
# Final PDF depends on manuscript source, plots, and tables
|
||
|
|
output/manuscript.pdf: report/manuscript.tex $(PLOTS) $(TABLES)
|
||
|
|
cd report\
|
||
|
|
&& pdflatex manuscript.tex\
|
||
|
|
&& pdflatex manuscript.tex\
|
||
|
|
&& mv manuscript.pdf ../output/manuscript.pdf
|
||
|
|
|
||
|
|
# Base data generation from raw data
|
||
|
|
data/base/data.csv: notebooks/make_basedata.ipynb data/raw/experimental_data.csv
|
||
|
|
cd notebooks\
|
||
|
|
&& papermill make_basedata.ipynb /dev/null
|
||
|
|
|
||
|
|
# Pattern rule for tables
|
||
|
|
$(TABLES): output/tables/%.tex: notebooks/tab_%.ipynb data/base/data.csv
|
||
|
|
cd notebooks\
|
||
|
|
&& papermill $(notdir $<) /dev/null
|
||
|
|
|
||
|
|
# Pattern rule for plots
|
||
|
|
$(PLOTS): output/plots/%.png: notebooks/plot_%.ipynb data/base/data.csv
|
||
|
|
cd notebooks\
|
||
|
|
&& papermill $(notdir $<) /dev/null
|
||
|
|
|
||
|
|
# Clean up generated files
|
||
|
|
clean: clean_notebooks clean_report
|
||
|
|
rm -f data/base/data.csv data/base/data.pkl
|
||
|
|
rm -f output/plots/*.png
|
||
|
|
rm -f output/tables/*.tex
|
||
|
|
rm -f output/manuscript.pdf
|
||
|
|
|
||
|
|
# Clear notebook outputs
|
||
|
|
clean_notebooks:
|
||
|
|
jupyter nbconvert notebooks/*.ipynb --clear-output --inplace
|
||
|
|
|
||
|
|
# Clean up LaTeX auxiliary files
|
||
|
|
clean_report:
|
||
|
|
rm -f report/manuscript.aux
|
||
|
|
rm -f report/manuscript.log
|
||
|
|
rm -f report/manuscript.out
|
||
|
|
rm -f report/manuscript.bbl
|
||
|
|
rm -f report/manuscript.blg
|